PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_31492-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 138aa    MW: 14674.7 Da    PI: 10.7091
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_31492-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-0781124243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      g W++ Ed  l++a k+++++   +W+++a+ ++ g+t   c  r
  TRIUR3_31492-P1  81 GGWSAGEDRSLLNALKEFPKDtamRWEKVAAAVP-GKTKAGCMKR 124
                      56********************************.***9888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.6E-479131IPR001005SANT/Myb domain
SuperFamilySSF466894.6E-1079129IPR009057Homeodomain-like
PfamPF002491.3E-681124IPR001005SANT/Myb domain
PROSITE profilePS500906.86481129IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.4E-681129IPR009057Homeodomain-like
CDDcd001671.25E-583129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MELLRRQMLK HPAGEPQRWE KIAAVFGGPR TPEGLNPAAK SGGGTAAGGS FEQFLRKRKP  60
LDPRAGAADA DTGGNAGGGD GGWSAGEDRS LLNALKEFPK DTAMRWEKVA AAVPGKTKAG  120
CMKRVTELKR DFRSSKEP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15459LRKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519380.0JF951938.1 Aegilops speltoides clone TaMYB55 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008661924.11e-68PREDICTED: LOC100282280 isoform X1
RefseqXP_008661925.11e-68PREDICTED: LOC100282280 isoform X1
TrEMBLM7YN596e-95M7YN59_TRIUA; DnaJ homolog subfamily C member 2
STRINGGRMZM2G001530_P013e-68(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.17e-35MYB_related family protein